Download abstract book

Download the NI2012 abstract book here. The page numbers in the index are clickable for easy browsing.

 

Abstracts grouped by Topic

Digital atlasing (14)

  • Online repository of three-dimensional models of brain structures
    Piotr Majka (Nencki Institute of Experimental Biology), Jakub M. Kowalski (Nencki Institute of Experimental Biology), Natalia Chlodzinska (Nencki Institute of Experimental Biology), Daniel K. Wójcik (Nencki Institute of Experimental Biology)
  • Integration of multimodal neuroanatomical data of gray short-tailed opossum
    Piotr Majka (Nencki Institute of Experimental Biology), Natalia Chlodzinska (Nencki Institute of Experimental Biology), Tomasz Banasik (H. Niewodniczański Institute of Nuclear Physics PAN), Ruzanna L. Djavadian (Nencki Institute of Experimental Biology), Władysław P. Węglarz (H. Niewodniczański Institute of Nuclear Physics PAN), Krzysztof Turlejski (Nencki Institute of Experimental Biology), Daniel K. Wójcik (Nencki Institute of Experimental Biology)
  • Online registration workflows for atlases of rodent brain and accuracy assessment of spatial translation
    Ilya Zaslavsky (San Diego Supercomputer Center, UCSD), Asif Memon (University of California, San Diego), Stephan Lamont (University of California, San Diego), David Valentine (San Diego Supercomputer Center, UCSD), Luis Ibanez (Kitware, Inc.), Gang Song (University of Pennsylvania), Brian Avants (University of Pennsylvania), James Gee (University of Pennsylvania), Yang Liu (University of Pennsylvania), Jyl Boline (Informed Minds)
  • Application and evaluation of automated methods to extract brain connectivity statements from free text
    Leon French (University of British Columbia), Suzanne Lane (University of British Columbia), Lydia Xu (University of British Columbia), Cathy Kwok (University of British Columbia), Celia Siu (University of British Columbia), YiQi Chen (University of British Columbia), Claudia Krebs (University of British Columbia), Paul Pavlidis (University of British Columbia)
  • Registration workflows for the creation of INCF digital atlas hubs
    Jyl Boline (Informed Minds), Brian Avants (University of Pennsylvania), Richard Baldock (MRC Human Genetics Unit and IGMM), Rembrandt Bakker (Radboud University), Albert Burger (MRC Human Genetics Unit and Heriot-Watt University), James Gee (University of Pennsylvania), Christian Haselgrove (University of Massachusetts Medical Center), Andreas Hess (Institute of Experimental and Clinical Pharmacology and Toxicology), Luis Ibanez (Kitware Inc.), Stephen Larson (University of California), Piotr Majka (Nencki Institute of Experimental Biology), Yuko Okamura-Oho (Brain Research Network and RIKEN Advanced Science Institute), Seth Ruffins (Broad CIRM Center, USC), Ilya Zaslavsky (San Diego Supercomputer Center, University of California)
  • NeuroMaps: Map Data to the Waxholm Atlas for Presentation and Publication
    Douglas Bowden (University of Washington - Seattle), Eider Moore (University of Washington - Seattle), Shanshan Sun (University of Washington - Seattle), Mark Dubach (University of Washington - Seattle )
  • A segmentation guide and probabilistic atlas of the C57BL/6J mouse brain from magnetic resonance imaging
    Jeremy Ullmann (The University of Queensland), Charles Watson (Curtin University), Andrew Janke (The University of Queensland), Marianne Keller (The University of Queensland), Nyoman Kurniawan (The University of Queensland), Zhengyi Yang (The University of Queensland), Kay Richards (Florey Neurosciences Institute), George Paxinos (The University of New South Wales, ), Gary Egan (Monash University), Steven Petrou (Florey Neuroscience Institutes), Perry Bartlett (The University of Queensland), Graham Galloway (The University of Queensland), David Reutens (The University of Queensland)
  • Integrated Analysis of Anatomical Gene Expression Maps and Co-Expression Networks Using a Database, ViBrism
    Yuko Okamura-Oho (BReNt-Brain Research Network and Advanced Science Institute, RIKEN), Kazuro Shimokawa (Department of Gene Diagnostics and Therapeutics, Research Institute, National Center for Global Health and Medicine), Satoko Takemoto (Bio-research Infrastructure Construction Team, Advanced Science Institute, RIKEN ), Gang Song (Penn Image Computing and Science Laboratory, University of Pennsylvania), James Gee (Penn Image Computing and Science Laboratory, University of Pennsylvania), Hideo Yokota (Bio-research Infrastructure Construction Team, Advanced Science Institute, RIKEN )
  • A Digital Atlas of Ion Channels Expression Patterns in the Two-Week-Old Rat Brain
    Volodymyr Shcherbatyy (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), James Carson (Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA), Murat Yaylaoglu (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Katharina Jaeckle (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Frauke Grabbe (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Maren Brockmeyer (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Ezekiel Gomez (Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA), Tao Ju (Department of Computer Science and Engineering, Washington University in St. Louis, St. Louis, MO), Gregor Eichele (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen)
  • 16 landmarks of the mouse brain have been validated as fiducials for registration to WHS
    Marina Sergejeva (Institute of Pharmacology, FAU Erlangen), Rembrandt Bakker (Radboud University Nijmegen), André Gaudnek (Institute of Pharmacology, FAU Erlangen), Yuko Okamura-Oho (Brain Research Network and RIKEN Advanced Science Institute), Jyl Boline (Informed Minds), Andreas Hess (Institute of Pharmacology, FAU Erlangen)
  • First generation Waxholm atlas of the Sprague-Dawley rat brain
    Eszter A. Papp (CMBN, Institute of Basic Medical Sciences, University of Oslo), Trygve B. Leergaard (CMBN, Institute of Basic Medical Sciences, University of Oslo), G. Allan Johnson (Center for in vivo Microscopy, Dept Radiology, Duke University Medical Center), Jan G. Bjaalie (CMBN, Institute of Basic Medical Sciences, University of Oslo)
  • High resolution volumetric atlas of the rat hippocampal region and its subdivisions
    Lisa J Kjonigsen (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, UIO, Oslo), Trygve B Leergaard (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, UIO, Oslo), G Allan Johnson (Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC), Menno P Witter (The Kavli Institute for Systems Neuroscience & Centre for the Biology of Memory, NTNU, Trondheim), Jan G Bjaalie (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, UIO, Oslo)
  • Virtual Fly Brain - a data hub for Drosophila neurobiology
    David Osumi-Sutherland (University of Cambridge), Nestor Milyaev (Edinburgh University), Marta Costa (University of Cambridge), Gregory S.X.E. Jefferis (MRC Laboratory of Molecular Biology), Cahir J. O'Kane (University of Cambridge), J. Douglas Armstrong (Edinburgh University)
  • 101 labeled brains and a new human cortical labeling protocol
    Jason Tourville (Boston University), Arno Klein (Columbia University)