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Computational neuroscience
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Computational neuroscience (47)
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Brain shape and thermoregulation: a quantitative approach
Emiliano Bruner (Centro Nacional de Investigación sobre la Evolución Humana), José Manuel de la Cuétara (Centro Nacional de Investigación sobre la Evolución Humana), Fabio Musso (Universidad de Burgos)
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Brain heat dissipation patterns in modern humans, fossil hominids and great apes: A comparative study
José Manuel de la Cuétara (Centro Nacional de Investigación sobre la Evolución Humana), Fabio Musso (Universidad de Burgos), Emiliano Bruner (Centro Nacional de Investigación sobre la Evolución Humana)
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A spatial coding scheme to define the neuron types in the Drosophila brain
Chao-Chun Chuang (National Center for High-Performance Computing; Institute of Bioinformatics, National Chiao Tung University), Chang-Wei Yeh (National Center for High-Performance Computing), Chang-Huain Hsieh (National Center for High-Performance Computing), Hsiu-Ming Chang (Brain Research Center, National Tsing Hua University), Jenn-Kang Hwang (Institute of Bioinformatics and Systems Biology, National Chiao Tung University)
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Morphology and Synaptic Characteristics Based Prediction of Visual Cortex Spike Properties for Different Functions
Venkateswaran Nagarajan (WAran Research FoundaTion), Vignesh Saptarishi Ramesh (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Ramprakash Srinivasan (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Dinesh Kannan Kabaleeswaran (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Vishal Raghu (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Sharan Srinivas Jagathrakshakan (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Sharath Navalpakkam Krishnan (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Thiagarajan Thirupatchur Sanjayasarathy (Charaka Group - Computational Neuroscience, WAran Research FoundaTion)
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Independent components of reconstructed current sources reflect activity of individual cell populations
Helena Głąbska (Department of Neurophysiology, Nencki Institute), Jan Potworowski (Department of Neurophysiology, Nencki Institute), Szymon Łęski (Department of Neurophysiology, Nencki Institute), Daniel Wójcik (Department of Neurophysiology, Nencki Institute)
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The intrinsic and extrinsic connectome of subregions of the basal ganglia
Oliver Schmitt (Department of Anatomy, Uni Rostock), Peter Eipert (Department of Anatomy, Uni Rostock), Konstanze Philipp (Department of Anatomy, Uni Rostock), Richard Kettlitz (Department of Anatomy, Uni Rostock), Andreas Wree (Department of Anatomy, Uni Rostock)
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Beyond the Cortical Column - Structural Organization Principles in Rat Vibrissal Cortex
Marcel Oberlaender (Max Planck Florida Institute), Rajeev Narayanan (Center for Neurogenomics and Cognitive Research), Robert Egger (Max Planck Florida Institute), Hanno Meyer (Max Planck Florida Institute), Lothar Baltruschat (Max Planck Florida Institute), Vincent Dercksen (Zuse Institute Berlin), Randy Bruno (Columbia University), Christiaan de Kock (Center for Neurogenomics and Cognitive Research), Bert Sakmann (Max Planck Florida Institute)
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A spiking neural network model of memory-based reinforcement learning
Takashi Nakano (Okinawa Institute of Science and Technology), Makoto Otsuka (Okinawa Institute of Science and Technology), Junichiro Yoshimoto (Okinawa Institute of Science and Technology), Kenji Doya (Okinawa Institute of Science and Technology)
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Sensorimotor Modeling of Speech Production, Speech Perception, and Speech Acquisition
Bernd J. Kroeger (Neurophonetics Group at DPPCD, RWTH Aachen Univ., Germany; School of Computer Science, Tianjin Univ., China ), Cornelia Eckers (Neurophonetics Group at DPPCD, RWTH Aachen University, Germany), Christiane Neuschaefer-Rube (Department of Phoniatrics, Pedaudiology, and Communication Disorders (DPPCD), RWTH Aachen University, Germany)
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Roles played by depressing synapses in neural circuits
Joanna Jędrzejewska-Szmek (University of Warsaw Faculty of Physics), Jarosław Żygierewicz (University of Warsaw Faculty of Physics)
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Allometric scaling of brain energetics and hemodynamics in relation to capillary scaling.
Jan Karbowski (Polish Academy of Sciences)
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Metabolic energy per synapse is approximately conserved during development in mammalian brains.
Jan Karbowski (Polish Academy of Sciences)
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Continuum Model of Retinal Waves in Starburst Amacrine Cells
Benjamin Lansdell (Department of Applied Mathematics, University of Washington), J. Nathan Kutz (Department of Applied Mathematics, University of Washington)
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Electrodiffusion in neural tissue at long timescales
Geir Halnes (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Ivar Østby (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Klas Pettersen (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Stig W. Omholt (Centre for Integrative Genetics (CIGENE), Department of Animal Science, Norwegian University of Life Sciences, Ås, Norw), Gaute T. Einevoll (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway)
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An indirect encoding scheme for artificial neural networks based on gene regulatory networks
Martin Pyka (Department of Psychiatry, University of Marburg), Sascha Hauke (Telecooperation Group, Technische Universität Darmstadt), Dominik Heider (Department of Bioinformatics, University of Duisburg-Essen)
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Towards Automated Analysis of Connectomes: The Configurable Pipeline for the Analysis of Connectomes (C-PAC)
Sharad Sikka (Nathan S Kline Institute), Brian Cheung (Child Mind Institute), Ranjit Khanuja (Child Mind Institute), Satra Ghosh (Massachusetts Institute of Technology), Chao-gan Yan (Nathan S Kline Institute), Qingyang Li (Child Mind Institute), Joshua Vogelstein (Johns Hopkins University), Randal Burns (Johns Hopkins University), Stanley Colcombe (Nathan S Kline Institute), Cameron Craddock (Virginia Tech Carilion Reseach Institute), Maarten Mennes (Donders Centre for Cognitive Neuroimaging), Clare Kelly (NYU Child Study Center), Adriana Dimartino (NYU Child Study Center), Francisco Castellanos (NYU Child Study Center), Michael Milham (Child Mind Institute)
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Computational model-based identification of the critical alterations in parkinsonian basal ganglia’s physiology
George Tsirogiannis (Biomedical Simulations and Imaging Laboratory, National Technical University of Athens), Ioanna Chronaiou (Biomedical Simulations and Imaging Laboratory, National Technical University of Athens), George Tagaris (Department of Neurology, “G. Gennimatas” Athens General Hospital), Konstantina Nikita (Biomedical Simulations and Imaging Laboratory, National Technical University of Athens)
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EEG Analysis in PhysioDesigner
Hideki Oka (NIJC, RIKEN BSI), Ken-ichiro Iwasaki (NIJC,RIKEN BSI), Yoshiyuki Asai (OIST), Taishin Nomura (Department of Mechanical Science and Bioengineering, Osaka University), Yoko Yamaguchi (NIJC, RIKEN BSI)
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Modeling realistic extracellular recordings of neuronal populations for the purpose of evaluating automatic spike-sorting algorithms
Espen Hagen (Dept. Mathematichal Sciences and Technology, UMB), Torbjørn B Ness (Dept. Mathematichal Sciences and Technology, UMB), Amir Khosrowshahi (Dept. Mathematichal Sciences and Technology, UMB), Felix Franke (Bio Engineering Laboratory, ETH Zürich), Gaute T Einevoll (Dept. Mathematichal Sciences and Technology, UMB)
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Associating spontaneous with evoked activity in a neural mass model of cat visual cortex
Manh Nguyen Trong (Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig), Ingo Bojak (School of Psychology (CN-CR), University of Birmingham), Thomas Knösche (Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig)
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Optimizing Performance of Endogenous Neural Stem Cell Therapy for Ischemic Stroke: A Neuroinformatics and Neuroimaging Approach to Translational Medicine
Suhela Kapoor (National Brain Research Centre), VPS Rallabandi (National Brain Research Centre), Prasun Roy (National Brain Research Centre)
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A computational model of the trichromatic cone mosaic
Yoshimi Kamiyama (Information Science and Technology, Aichi Prefectural University), Daiki Sone (Information Science and Technology)
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Numerical simulations of glutamate diffusion in a synaptic cleft. Dependence on the geometry and its possible interactions
Wojciech Goch (Institute of Biochemistry and Biophysics PAS), Wojciech Bal (Institute of Biochemistry and Biophysics PAS)
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A simulation framework for acute extracellular recordings
Philipp Meier (TU Berlin, Neural Information Processing Group), Felix Franke (ETH Zürich, D-BSSE, Bio Engineering Laboratory (BEL)), Espen Hagen (UMB, Dept. Mathematichal Sciences and Technology), Gaute Einevoll (UMB, Dept. Mathematichal Sciences and Technology), Klaus Obermayer (TU Berlin, Neural Information Processing Group)
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CAJAL3D: Towards A Fully Automatic Pipeline for Connectome Estimation from High-Resolution EM Data
Dean M. Kleissas (Johns Hopkins University, Applied Physics Laboratory), William R. Gray (Johns Hopkins University, Applied Physics Laboratory; Johns Hopkins University), James M. Burck (Johns Hopkins University, Applied Physics Laboratory), Joshua T. Vogelstein (Johns Hopkins University), Eric Perlman (Janelia Farm Research Campus, HHMI), Philippe M. Burlina (Johns Hopkins University, Applied Physics Laboratory), Randal Burns (Johns Hopkins University), R. Jacob Vogelstein (Johns Hopkins University, Applied Physics Laboratory; Johns Hopkins University)
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The Scourge of Neuroanatomical Nomenclature: A Rational Strategy
Maryann E. Martone (University of California, San Diego), Fahim T. Imam (University of California, San Diego), Stephen D. Larson (University of California, San Diego)
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From evolving artificial gene regulatory networks to evolving spiking neural networks for signal processing
Ahmed Abdelmotaleb (Adam Mickiewicz University), Borys Wróbel (Adam Mickiewicz University)
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NeuGen 2.0 - Automatic generation of large neuron networks using anatomical data bases
Sergei Wolf (University of Frankfurt), Stefan Grein (University of Frankfurt), Gillian Queisser (University of Frankfurt)
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Reciprocal inhibition and slow calcium decay in perigeniculate interneurons explain changes of spontaneous firing of thalamic cells caused by cortical inactivation.
Jacek Rogala (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Wioletta Waleszczyk (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Szymon Łęski (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Andrzej Wróbel (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Daniel Krzysztof Wójcik (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw)
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Gamma --> beta frequency shift in the circuits with strongly facilitating synapses.
Joanna Jędrzejewska-Szmek (Faculty of Physics, University of Warsaw)
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Modeling axon outgrowth in an inhomogeneous environment
Pieter Laurens Baljon (VU University Amsterdam), Jaap van Pelt (VU University Amsterdam), Arjen van Ooyen (VU University Amsterdam)
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Towards new model of neuronal growth: Comparison of models and tools for neuronal growth in vitro
Riikka Havela (Department of Signal Processing, Tampere University of Technology), Jugoslava Aćimović (Department of Signal Processing, Tampere University of Technology), Tuomo Mäki-Marttunen (Department of Signal Processing, Tampere University of Technology), Marja-Leena Linne (Department of Signal Processing, Tampere University of Technology)
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The role of intra-striatal synaptic interactions for shaping cortico-striatal network dynamics
Jovana Belić (Royal Institute of Technology (KTH), Stockholm and Bernstein Center Freiburg), Andreas Klaus (Karolinska Institutet (KI), Stockholm and National Institute of Mental Health (NIH), Bethesda, USA), Dietmar Plenz (National Institute of Mental Health (NIH), Bethesda, USA), Jeanette Hellgren Kotaleski (Royal Institute of Technology (KTH), Stockholm and Karolinska Institutet (KI), Stockholm )
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Effective generators for superpositions of non-Poissonian spike trains
Moritz Deger (Bernstein Center Freiburg, University of Freiburg), Moritz Helias (Inst of Neuroscience and Medicine (INM-6), Research Center Juelich), Stefan Rotter (Bernstein Center Freiburg & Faculty of Biology, University of Freiburg)
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Visual perception of circular arcs and straight lines by simple interaction between edge pixels
Wonil Chang (Department of Bio and Brain Engineering, KAIST), Suh-Yeon Dong (Department of Electrical Engineering, KAIST), Soo-Young Lee (Department of Electrical Engineering, KAIST)
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Matching Pursuit Algorithm based on L1 norm
Tomasz Spustek (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Rafał Kuś (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Urszula Malinowska (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Piotr Durka (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland)
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In silico docking reveals possible Riluzole binding sites on Nav1.6 sodium channel: implications for drug design strategy on Amyotrophic Lateral Sclerosis
Omar Sierra (Pontificia Universidad Javeriana), Janneth González (Pontificia Universidad Javeriana), George Barreto (Pontificia Universidad Javeriana)
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Robust automated protocol for extraction and comparison of single neuron morphology
Hiroyuki Ai (Fukuoka University), Stephan Haupt (University of Tokyo), Philipp Rautenberg (Ludwig-Maximilians-Universität München), Michael Stransky (Ludwig-Maximilians-Universität München), Thomas Wachtler (Ludwig-Maximilians-Universität München), Hidetoshi Ikeno (University of Hyogo)
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Estimation method for biophysical properties of insect neurons in the combination of suitable stimulation and multi-compartment simulation with supercomputers
Daisuke Miyamoto (Graduate School of Information Science and Technology, The University of Tokyo ), Tomoki Kazawa (Research Center for Advanced Science and Technology, The University of Tokyo ), Stephan Haupt (Research Center for Advanced Science and Technology, The University of Tokyo ), Masashi Tabuchi (Graduate School of Engineering, The University of Tokyo ), Tomoaki Mori (Graduate School of Information Science and Technology, The University of Tokyo ), Kei Nakatani (Graduate School of Life and Environmental Science, Tsukuba University ), Ryohei Kanzaki (Research Center for Advanced Science and Technology, The University of Tokyo )
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Modelling Realistic Neuron Shape Development in А Realistic Cellular Tissue Environment
Jordan Genoff (Technical University of Sofia at Plovdiv)
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Simulating the Self-Organization of Winner-Take-All Networks
Roman Bauer (Institute of Neuroinformatics Zurich), Sabina Pfister (Institute of Neuroinformatics Zurich), Rodney Douglas (Institute of Neuroinformatics Zurich)
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Modelling calcium-dependent proteins in the spine - challenges and solutions
Melanie I. Stefan (California Institute of Technology, Biology Division), Shirley Pepke (California Institute of Technology, Biology Division), Stefan Mihalas (California Institute of Technology, Biology Division), Thomas Bartol (Salk Institute), Terrence Sejnowki (Salk Institute), Mary B. Kennedy (California Institute of Technology, Biology Division)
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Modulation of Spontaneous Cortical Network Dynamics by Weak Global Perturbations
Flavio Frohlich (UNC Chapel Hill, Dept. of Psychiatry)
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A Biologically Plausible, Computationally Efficient Model of the Primary Somatosensory Cortical Column in Mouse
Chao Huang (Laboratory of Neural Circuits and Plasticity, University of Southern California), Andrey Resnik (Laboratory of Neural Circuits and Plasticity, University of Southern California), Tansu Celikel (Laboratory of Neural Circuits and Plasticity, University of Southern California)
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The NeuroML C. elegans Connectome
Tim Busbice (Interintelligence Research), Padraig Gleeson (University College London), Sergey Khayrulin (A.P. Ershov Institute of Informatics Systems), Matteo Cantarelli (OpenWorm.org), Alexander Dibert (A.P. Ershov Institute of Informatics Systems), Giovanni Idili (OpenWorm.org), Andrey Palyanov (A.P. Ershov Institute of Informatics Systems), Stephen Larson (OpenWorm.org)
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Impact of Parkinson's Disease's Severity on Neuron Firing Pattern in Subthalamic Nucleus
Jiri Wild (Dept. of Cybernetics, Faculty of Electrical Engineering, Czech Technical University), Dan Novak (Dept. of Cybernetics, Faculty of Electrical Engineering, Czech Technical University), Eduard Bakstein (Dept. of Cybernetics, Faculty of Electrical Engineering, Czech Technical University), Robert Jech (Dept. of Neurology, 1st Faculty of Medicine and General Teaching Hospital, Charles University in Prague)
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Novel self-organizing rules for retinotopic remapping
Markus Butz (Ruhr-University Bochum), Arjen van Ooyen (VU Amsterdam)
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