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General neuroinformatics (24)
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Reducing duplication and redundancy in declarative model specifications
Robert Cannon (Textensor Limited), Padraig Gleeson (University College London), Sharon Crook (Arizona State University), Angus Silver (University College London)
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High-speed simulation of the dynamic neural responses of retinal and cortical simple neurons to complex visual scenes using general purpose computing on graphics processing units.
Osamu Shouno (Honda Research Institute Japan Co., Ltd.), Hiroshi Tsujino (Honda Research Institute Japan Co., Ltd.)
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Exploring Mammalian Brain Connectivity using NeuroLex
Anita Bandrowski (University of California San Diego), Amarnath Gupta (University of California San Diego), Auroni Gupta (University of California San Diego), Stephen Larson (University of California San Diego), Maryann Martone (University of California San Diego)
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SenseLab: Neuroinformatics tools to support multiscale and multidisciplinary integration.
Gordon Shepherd (Yale)
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3D structure and cellular architecture of the thalamo cortical vibrissal system
Robert Egger (Digital Neuroanatomy, Max Planck Florida Institute, Jupiter, FL), Hanno S. Meyer (Digital Neuroanatomy, Max Planck Florida Institute, Jupiter, FL), Stefan Reissl (Digital Neuroanatomy, Max Planck Florida Institute, Jupiter, FL), Rajeevan T. Narayanan (Integrative Neurophysiology, Ctr. for Neurogenomics and Cognitive Res. (CNCR), Amsterdam), Christiaan P.J. de Kock (Integrative Neurophysiology, Ctr. for Neurogenomics and Cognitive Res. (CNCR), Amsterdam), Rita Foerster (Max Planck Institute of Neurobiology, Munich), Bert Sakmann (Digital Neuroanatomy, Max Planck Florida Institute, Jupiter, FL), Marcel Oberlaender (Digital Neuroanatomy, Max Planck Florida Institute, Jupiter, FL)
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Simulator for Realistic High-Density Microelectrode Array Signals
David Jäckel (ETH Zurich, Department of Biosystems Science and Engineering), Urs Frey (RIKEN, Quantitative Biology Center), Felix Franke (ETH Zurich, Department of Biosystems Science and Engineering), Andreas Hierlemann (ETH Zurich, Department of Biosystems Science and Engineering)
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Functional Contributions Derived from the Game-theoretical Analysis of Brain Damage after Stroke
Melissa Zavaglia (Dept. Comput. Neurosci. Univ. Med. Ctr. Hamburg-Eppendorf; Jacobs Univ. Bremen), Nils D Forkert (Dept. Comput. Neurosci. Univ. Med. Ctr. Hamburg-Eppendorf), Bastian Cheng (Dept. Neurology, Univ. Med. Ctr. Hamburg-Eppendorf), Götz Thomalla (Dept. Neurology, Univ. Med. Ctr. Hamburg-Eppendorf), Claus C Hilgetag (Dept. Comput. Neurosci. Univ. Med. Ctr. Hamburg-Eppendorf; Jacobs Univ. Bremen; Boston Univ.)
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TissueStack: a new way to view your imaging data
Andrew Janke (Center for Advanced Imaging), Harald Waxenegger (Center for Advanced Imaging), Jeremy Ullmann (Center for Advanced Imaging), Graham Galloway (Center for Advanced Imaging)
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PCA-VisData - a new Evaluation and Visualization Tool Using the Database RodImAnD for Analysis of Rodents Brain Function in Drug Research
Laura Cristina Konerth (Instit. of Pharmacology, FAU Erlangen-Nuremberg), Andreas Hess (Instit. of Pharmacology, FAU Erlangen-Nuremberg, INCF: Digital Atlasing Infrastructure Task Force)
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Connecting Brain Imaging Terms to Established Lexicons: a Precursor for Data Sharing and Querying
Karl Helmer (Massachusetts General Hospital), Satrajit Ghosh (Massachusetts Institute of Technology), B. Nolan Nichols (University of Washington), David Keator (University of California, Irvine), Thomas Nichols (University of Warwick), Jessica Turner (The Mind Institute)
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COINS (Collaborative Informatics Neuroimaging Suite): Give, Get, Collect
Margaret King (The Mind Research Network), William Courtney (The Mind Research Network), Jessica Turner (The Mind Research Network), Runtang Wang (The Mind Research Network), Dylan Wood (The Mind Research Network), Vince Calhoun (The Mind Research Network)
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SignalML 2.0
Zbigniew Jędrzejewski-Szmek (Faculty of Physics, University of Warsaw), Aleksander Michalski (Nencki Intitute of Experimental Biology), Kamil Góźdź (Ericpol), Jakub Hałun (Ericpol), Grzegorz Stadnik (Ericpol), Joanna Jędrzejewska-Szmek (Faculty of Physics, University of Warsaw), Paweł Kordowski (Faculty of Physics, University of Warsaw), Piotr Durka (Faculty of Physics, University of Warsaw)
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Orchestration of web services in the NIF project: using the Kepler workflow engine for data fusion
Vadim Astakhov (UCSD), Anita Bandrowski (UCSD), Amarnath Gupta (UCSD), Jeffery Grethe (UCSD), Maryann Martone (UCSD)
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Representation of the NeuroNames Ontology in OWL
Douglas Bowden (University of Washington - Seattle), Fahim Imam (Fahim Imam [smtifahim@gmail.com]), Maryann Martone (University of California at San Diego (UCSD))
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Neuroinformatics labs in Warsaw: free as in 'freedom'
Jarosław Rybusiński (Faculty of Physics, University of Warsaw), Anita Gardias (Faculty of Physics, University of Warsaw), Karol Augustin (Faculty of Physics, University of Warsaw), Rafał Kuś (Faculty of Physics, University of Warsaw), Mateusz Kruszyński (Faculty of Physics, University of Warsaw), Zbigniew Jędrzejewski-Szmek (Faculty of Physics, University of Warsaw), Hubert Klekowicz (Faculty of Physics, University of Warsaw), Piotr Durka (Faculty of Physics, University of Warsaw)
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Retistruct: A package to reconstruct flattened retinae
David C Sterratt (University of Edinburgh), Daniel Lyngholm (King’s College London), David Willshaw (University of Edinburgh), Ian D Thompson (King’s College London)
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Spike sorting for large dense arrays
Shabnam N. Kadir (NYU Langone Medical Center, New York/Imperial College London), Dan F.M. Goodman (Ecole Normale Superieure, Paris), John Schulman (Berkeley, California), Gyorgy Buzsaki (NYU Langone Medical Center, New York), Kenneth D. Harris (Imperial College London)
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Modeling neuroanatomical experimental design using the Ontology of Experimental Variables and Values (OoEVV)
Gully A.P.C. Burns (Information Sciences Institute / University of Southern California), Marcelo Tallis (Information Sciences Institute / University of Southern California), Jessica Turner (Mind Research Network / University of New Mexico)
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The Informatics Backbone of the Brain Genomics Superstruct Project Open Data Release
Timothy O'Keefe (Harvard University, Neuroinformatics Research Group), Victor Petrov (Harvard University, Neuroinformatics Research Group), Gabriele Fariello (Harvard University, Neuroinformatics Research Group), Avram Holmes (Harvard University, Center for Brain Science), Randy Buckner (Harvard University, Center for Brain Science)
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Datajongleur - controlling data objects and data models with Python at the neuroscientist's workbench
Philipp Lothar Rautenberg (Ludwig-Maximilans Universität München, Department of Biology, G-Node, Planegg-Martinsried), Andrey Sobolev (Ludwig-Maximilans Universität München, Department of Biology, G-Node, Planegg-Martinsried), Michael Stransky (Ludwig-Maximilians-Universität München, Institute for Computer Science, Munich), Thomas Wachtler (Ludwig-Maximilans Universität München, Department of Biology, G-Node, Planegg-Martinsried)
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XCEDE-DM: A neuroimaging extension to the W3C provenance data model
Satrajit Ghosh (Massachusetts Institute of Technology), Nolan Nichols (Integrated Brain Imaging Center, University of Washington, Seattle, WA), Syam Gadde (Brain Imaging and Analysis Center, Duke University, Durham, NC), Jason Steffener (Columbia University, New York, NY), David Keator (Department of Psychiatry and Human Behavior, Department of Computer Science; University of California, Irvine)
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Mindboggle 2 interface: online visualization of extracted brain features with XTK
Arno Klein (Columbia University), Nolan Nichols (Washington University), Daniel Haehn (Children's Hospital Boston)
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Mindboggle 2: Automated human brain MRI feature extraction, identification, shape analysis, and labeling
Arno Klein (Columbia University), Forrest Bao (Texas Tech University), Eliezer Stavsky (Columbia University), Yrjö Häme (Columbia University), Joachim Giard (Universite Catholique de Louvain), Nolan Nichols (Washington University), Satrajit Ghosh (MIT)
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NIQuery: Neuroimaging Informatics Query Framework for Data Sharing, Discovery, and Analysis
B. Nolan Nichols (Integrated Brain Imaging Center, University of Washington, Seattle, WA), Robert F. Dougherty (Center for Cognitive and Neurobiological Imaging, Stanford University, Stanford, CA), Landon T. Detwiler (Integrated Brain Imaging Center, University of Washington, Seattle, WA), Gunnar Schaefer (Center for Cognitive and Neurobiological Imaging, Stanford University, Stanford, CA), Randall J. Frank (Integrated Brain Imaging Center, University of Washington, Seattle, WA), James F. Brinkley (Integrated Brain Imaging Center, University of Washington, Seattle, WA), Brian A. Wandell (Center for Cognitive and Neurobiological Imaging, Stanford University, Stanford, CA), Thomas J. Grabowski (Integrated Brain Imaging Center, University of Washington, Seattle, WA)
Computational neuroscience (47)
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Brain shape and thermoregulation: a quantitative approach
Emiliano Bruner (Centro Nacional de Investigación sobre la Evolución Humana), José Manuel de la Cuétara (Centro Nacional de Investigación sobre la Evolución Humana), Fabio Musso (Universidad de Burgos)
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Brain heat dissipation patterns in modern humans, fossil hominids and great apes: A comparative study
José Manuel de la Cuétara (Centro Nacional de Investigación sobre la Evolución Humana), Fabio Musso (Universidad de Burgos), Emiliano Bruner (Centro Nacional de Investigación sobre la Evolución Humana)
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A spatial coding scheme to define the neuron types in the Drosophila brain
Chao-Chun Chuang (National Center for High-Performance Computing; Institute of Bioinformatics, National Chiao Tung University), Chang-Wei Yeh (National Center for High-Performance Computing), Chang-Huain Hsieh (National Center for High-Performance Computing), Hsiu-Ming Chang (Brain Research Center, National Tsing Hua University), Jenn-Kang Hwang (Institute of Bioinformatics and Systems Biology, National Chiao Tung University)
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Morphology and Synaptic Characteristics Based Prediction of Visual Cortex Spike Properties for Different Functions
Venkateswaran Nagarajan (WAran Research FoundaTion), Vignesh Saptarishi Ramesh (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Ramprakash Srinivasan (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Dinesh Kannan Kabaleeswaran (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Vishal Raghu (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Sharan Srinivas Jagathrakshakan (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Sharath Navalpakkam Krishnan (Charaka Group - Computational Neuroscience, WAran Research FoundaTion), Thiagarajan Thirupatchur Sanjayasarathy (Charaka Group - Computational Neuroscience, WAran Research FoundaTion)
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Independent components of reconstructed current sources reflect activity of individual cell populations
Helena Głąbska (Department of Neurophysiology, Nencki Institute), Jan Potworowski (Department of Neurophysiology, Nencki Institute), Szymon Łęski (Department of Neurophysiology, Nencki Institute), Daniel Wójcik (Department of Neurophysiology, Nencki Institute)
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The intrinsic and extrinsic connectome of subregions of the basal ganglia
Oliver Schmitt (Department of Anatomy, Uni Rostock), Peter Eipert (Department of Anatomy, Uni Rostock), Konstanze Philipp (Department of Anatomy, Uni Rostock), Richard Kettlitz (Department of Anatomy, Uni Rostock), Andreas Wree (Department of Anatomy, Uni Rostock)
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Beyond the Cortical Column - Structural Organization Principles in Rat Vibrissal Cortex
Marcel Oberlaender (Max Planck Florida Institute), Rajeev Narayanan (Center for Neurogenomics and Cognitive Research), Robert Egger (Max Planck Florida Institute), Hanno Meyer (Max Planck Florida Institute), Lothar Baltruschat (Max Planck Florida Institute), Vincent Dercksen (Zuse Institute Berlin), Randy Bruno (Columbia University), Christiaan de Kock (Center for Neurogenomics and Cognitive Research), Bert Sakmann (Max Planck Florida Institute)
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A spiking neural network model of memory-based reinforcement learning
Takashi Nakano (Okinawa Institute of Science and Technology), Makoto Otsuka (Okinawa Institute of Science and Technology), Junichiro Yoshimoto (Okinawa Institute of Science and Technology), Kenji Doya (Okinawa Institute of Science and Technology)
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Sensorimotor Modeling of Speech Production, Speech Perception, and Speech Acquisition
Bernd J. Kroeger (Neurophonetics Group at DPPCD, RWTH Aachen Univ., Germany; School of Computer Science, Tianjin Univ., China ), Cornelia Eckers (Neurophonetics Group at DPPCD, RWTH Aachen University, Germany), Christiane Neuschaefer-Rube (Department of Phoniatrics, Pedaudiology, and Communication Disorders (DPPCD), RWTH Aachen University, Germany)
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Roles played by depressing synapses in neural circuits
Joanna Jędrzejewska-Szmek (University of Warsaw Faculty of Physics), Jarosław Żygierewicz (University of Warsaw Faculty of Physics)
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Allometric scaling of brain energetics and hemodynamics in relation to capillary scaling.
Jan Karbowski (Polish Academy of Sciences)
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Metabolic energy per synapse is approximately conserved during development in mammalian brains.
Jan Karbowski (Polish Academy of Sciences)
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Continuum Model of Retinal Waves in Starburst Amacrine Cells
Benjamin Lansdell (Department of Applied Mathematics, University of Washington), J. Nathan Kutz (Department of Applied Mathematics, University of Washington)
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Electrodiffusion in neural tissue at long timescales
Geir Halnes (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Ivar Østby (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Klas Pettersen (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway), Stig W. Omholt (Centre for Integrative Genetics (CIGENE), Department of Animal Science, Norwegian University of Life Sciences, Ås, Norw), Gaute T. Einevoll (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway)
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An indirect encoding scheme for artificial neural networks based on gene regulatory networks
Martin Pyka (Department of Psychiatry, University of Marburg), Sascha Hauke (Telecooperation Group, Technische Universität Darmstadt), Dominik Heider (Department of Bioinformatics, University of Duisburg-Essen)
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Towards Automated Analysis of Connectomes: The Configurable Pipeline for the Analysis of Connectomes (C-PAC)
Sharad Sikka (Nathan S Kline Institute), Brian Cheung (Child Mind Institute), Ranjit Khanuja (Child Mind Institute), Satra Ghosh (Massachusetts Institute of Technology), Chao-gan Yan (Nathan S Kline Institute), Qingyang Li (Child Mind Institute), Joshua Vogelstein (Johns Hopkins University), Randal Burns (Johns Hopkins University), Stanley Colcombe (Nathan S Kline Institute), Cameron Craddock (Virginia Tech Carilion Reseach Institute), Maarten Mennes (Donders Centre for Cognitive Neuroimaging), Clare Kelly (NYU Child Study Center), Adriana Dimartino (NYU Child Study Center), Francisco Castellanos (NYU Child Study Center), Michael Milham (Child Mind Institute)
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Computational model-based identification of the critical alterations in parkinsonian basal ganglia’s physiology
George Tsirogiannis (Biomedical Simulations and Imaging Laboratory, National Technical University of Athens), Ioanna Chronaiou (Biomedical Simulations and Imaging Laboratory, National Technical University of Athens), George Tagaris (Department of Neurology, “G. Gennimatas” Athens General Hospital), Konstantina Nikita (Biomedical Simulations and Imaging Laboratory, National Technical University of Athens)
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EEG Analysis in PhysioDesigner
Hideki Oka (NIJC, RIKEN BSI), Ken-ichiro Iwasaki (NIJC,RIKEN BSI), Yoshiyuki Asai (OIST), Taishin Nomura (Department of Mechanical Science and Bioengineering, Osaka University), Yoko Yamaguchi (NIJC, RIKEN BSI)
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Modeling realistic extracellular recordings of neuronal populations for the purpose of evaluating automatic spike-sorting algorithms
Espen Hagen (Dept. Mathematichal Sciences and Technology, UMB), Torbjørn B Ness (Dept. Mathematichal Sciences and Technology, UMB), Amir Khosrowshahi (Dept. Mathematichal Sciences and Technology, UMB), Felix Franke (Bio Engineering Laboratory, ETH Zürich), Gaute T Einevoll (Dept. Mathematichal Sciences and Technology, UMB)
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Associating spontaneous with evoked activity in a neural mass model of cat visual cortex
Manh Nguyen Trong (Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig), Ingo Bojak (School of Psychology (CN-CR), University of Birmingham), Thomas Knösche (Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig)
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Optimizing Performance of Endogenous Neural Stem Cell Therapy for Ischemic Stroke: A Neuroinformatics and Neuroimaging Approach to Translational Medicine
Suhela Kapoor (National Brain Research Centre), VPS Rallabandi (National Brain Research Centre), Prasun Roy (National Brain Research Centre)
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A computational model of the trichromatic cone mosaic
Yoshimi Kamiyama (Information Science and Technology, Aichi Prefectural University), Daiki Sone (Information Science and Technology)
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Numerical simulations of glutamate diffusion in a synaptic cleft. Dependence on the geometry and its possible interactions
Wojciech Goch (Institute of Biochemistry and Biophysics PAS), Wojciech Bal (Institute of Biochemistry and Biophysics PAS)
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A simulation framework for acute extracellular recordings
Philipp Meier (TU Berlin, Neural Information Processing Group), Felix Franke (ETH Zürich, D-BSSE, Bio Engineering Laboratory (BEL)), Espen Hagen (UMB, Dept. Mathematichal Sciences and Technology), Gaute Einevoll (UMB, Dept. Mathematichal Sciences and Technology), Klaus Obermayer (TU Berlin, Neural Information Processing Group)
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CAJAL3D: Towards A Fully Automatic Pipeline for Connectome Estimation from High-Resolution EM Data
Dean M. Kleissas (Johns Hopkins University, Applied Physics Laboratory), William R. Gray (Johns Hopkins University, Applied Physics Laboratory; Johns Hopkins University), James M. Burck (Johns Hopkins University, Applied Physics Laboratory), Joshua T. Vogelstein (Johns Hopkins University), Eric Perlman (Janelia Farm Research Campus, HHMI), Philippe M. Burlina (Johns Hopkins University, Applied Physics Laboratory), Randal Burns (Johns Hopkins University), R. Jacob Vogelstein (Johns Hopkins University, Applied Physics Laboratory; Johns Hopkins University)
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The Scourge of Neuroanatomical Nomenclature: A Rational Strategy
Maryann E. Martone (University of California, San Diego), Fahim T. Imam (University of California, San Diego), Stephen D. Larson (University of California, San Diego)
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From evolving artificial gene regulatory networks to evolving spiking neural networks for signal processing
Ahmed Abdelmotaleb (Adam Mickiewicz University), Borys Wróbel (Adam Mickiewicz University)
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NeuGen 2.0 - Automatic generation of large neuron networks using anatomical data bases
Sergei Wolf (University of Frankfurt), Stefan Grein (University of Frankfurt), Gillian Queisser (University of Frankfurt)
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Reciprocal inhibition and slow calcium decay in perigeniculate interneurons explain changes of spontaneous firing of thalamic cells caused by cortical inactivation.
Jacek Rogala (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Wioletta Waleszczyk (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Szymon Łęski (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Andrzej Wróbel (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw), Daniel Krzysztof Wójcik (Dept. of Neurophysiology, Nencki Institute, 02-093 Warsaw)
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Gamma --> beta frequency shift in the circuits with strongly facilitating synapses.
Joanna Jędrzejewska-Szmek (Faculty of Physics, University of Warsaw)
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Modeling axon outgrowth in an inhomogeneous environment
Pieter Laurens Baljon (VU University Amsterdam), Jaap van Pelt (VU University Amsterdam), Arjen van Ooyen (VU University Amsterdam)
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Towards new model of neuronal growth: Comparison of models and tools for neuronal growth in vitro
Riikka Havela (Department of Signal Processing, Tampere University of Technology), Jugoslava Aćimović (Department of Signal Processing, Tampere University of Technology), Tuomo Mäki-Marttunen (Department of Signal Processing, Tampere University of Technology), Marja-Leena Linne (Department of Signal Processing, Tampere University of Technology)
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The role of intra-striatal synaptic interactions for shaping cortico-striatal network dynamics
Jovana Belić (Royal Institute of Technology (KTH), Stockholm and Bernstein Center Freiburg), Andreas Klaus (Karolinska Institutet (KI), Stockholm and National Institute of Mental Health (NIH), Bethesda, USA), Dietmar Plenz (National Institute of Mental Health (NIH), Bethesda, USA), Jeanette Hellgren Kotaleski (Royal Institute of Technology (KTH), Stockholm and Karolinska Institutet (KI), Stockholm )
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Effective generators for superpositions of non-Poissonian spike trains
Moritz Deger (Bernstein Center Freiburg, University of Freiburg), Moritz Helias (Inst of Neuroscience and Medicine (INM-6), Research Center Juelich), Stefan Rotter (Bernstein Center Freiburg & Faculty of Biology, University of Freiburg)
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Visual perception of circular arcs and straight lines by simple interaction between edge pixels
Wonil Chang (Department of Bio and Brain Engineering, KAIST), Suh-Yeon Dong (Department of Electrical Engineering, KAIST), Soo-Young Lee (Department of Electrical Engineering, KAIST)
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Matching Pursuit Algorithm based on L1 norm
Tomasz Spustek (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Rafał Kuś (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Urszula Malinowska (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Piotr Durka (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland)
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In silico docking reveals possible Riluzole binding sites on Nav1.6 sodium channel: implications for drug design strategy on Amyotrophic Lateral Sclerosis
Omar Sierra (Pontificia Universidad Javeriana), Janneth González (Pontificia Universidad Javeriana), George Barreto (Pontificia Universidad Javeriana)
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Robust automated protocol for extraction and comparison of single neuron morphology
Hiroyuki Ai (Fukuoka University), Stephan Haupt (University of Tokyo), Philipp Rautenberg (Ludwig-Maximilians-Universität München), Michael Stransky (Ludwig-Maximilians-Universität München), Thomas Wachtler (Ludwig-Maximilians-Universität München), Hidetoshi Ikeno (University of Hyogo)
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Estimation method for biophysical properties of insect neurons in the combination of suitable stimulation and multi-compartment simulation with supercomputers
Daisuke Miyamoto (Graduate School of Information Science and Technology, The University of Tokyo ), Tomoki Kazawa (Research Center for Advanced Science and Technology, The University of Tokyo ), Stephan Haupt (Research Center for Advanced Science and Technology, The University of Tokyo ), Masashi Tabuchi (Graduate School of Engineering, The University of Tokyo ), Tomoaki Mori (Graduate School of Information Science and Technology, The University of Tokyo ), Kei Nakatani (Graduate School of Life and Environmental Science, Tsukuba University ), Ryohei Kanzaki (Research Center for Advanced Science and Technology, The University of Tokyo )
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Modelling Realistic Neuron Shape Development in А Realistic Cellular Tissue Environment
Jordan Genoff (Technical University of Sofia at Plovdiv)
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Simulating the Self-Organization of Winner-Take-All Networks
Roman Bauer (Institute of Neuroinformatics Zurich), Sabina Pfister (Institute of Neuroinformatics Zurich), Rodney Douglas (Institute of Neuroinformatics Zurich)
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Modelling calcium-dependent proteins in the spine - challenges and solutions
Melanie I. Stefan (California Institute of Technology, Biology Division), Shirley Pepke (California Institute of Technology, Biology Division), Stefan Mihalas (California Institute of Technology, Biology Division), Thomas Bartol (Salk Institute), Terrence Sejnowki (Salk Institute), Mary B. Kennedy (California Institute of Technology, Biology Division)
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Modulation of Spontaneous Cortical Network Dynamics by Weak Global Perturbations
Flavio Frohlich (UNC Chapel Hill, Dept. of Psychiatry)
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A Biologically Plausible, Computationally Efficient Model of the Primary Somatosensory Cortical Column in Mouse
Chao Huang (Laboratory of Neural Circuits and Plasticity, University of Southern California), Andrey Resnik (Laboratory of Neural Circuits and Plasticity, University of Southern California), Tansu Celikel (Laboratory of Neural Circuits and Plasticity, University of Southern California)
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The NeuroML C. elegans Connectome
Tim Busbice (Interintelligence Research), Padraig Gleeson (University College London), Sergey Khayrulin (A.P. Ershov Institute of Informatics Systems), Matteo Cantarelli (OpenWorm.org), Alexander Dibert (A.P. Ershov Institute of Informatics Systems), Giovanni Idili (OpenWorm.org), Andrey Palyanov (A.P. Ershov Institute of Informatics Systems), Stephen Larson (OpenWorm.org)
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Impact of Parkinson's Disease's Severity on Neuron Firing Pattern in Subthalamic Nucleus
Jiri Wild (Dept. of Cybernetics, Faculty of Electrical Engineering, Czech Technical University), Dan Novak (Dept. of Cybernetics, Faculty of Electrical Engineering, Czech Technical University), Eduard Bakstein (Dept. of Cybernetics, Faculty of Electrical Engineering, Czech Technical University), Robert Jech (Dept. of Neurology, 1st Faculty of Medicine and General Teaching Hospital, Charles University in Prague)
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Novel self-organizing rules for retinotopic remapping
Markus Butz (Ruhr-University Bochum), Arjen van Ooyen (VU Amsterdam)
Digital atlasing (14)
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Online repository of three-dimensional models of brain structures
Piotr Majka (Nencki Institute of Experimental Biology), Jakub M. Kowalski (Nencki Institute of Experimental Biology), Natalia Chlodzinska (Nencki Institute of Experimental Biology), Daniel K. Wójcik (Nencki Institute of Experimental Biology)
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Integration of multimodal neuroanatomical data of gray short-tailed opossum
Piotr Majka (Nencki Institute of Experimental Biology), Natalia Chlodzinska (Nencki Institute of Experimental Biology), Tomasz Banasik (H. Niewodniczański Institute of Nuclear Physics PAN), Ruzanna L. Djavadian (Nencki Institute of Experimental Biology), Władysław P. Węglarz (H. Niewodniczański Institute of Nuclear Physics PAN), Krzysztof Turlejski (Nencki Institute of Experimental Biology), Daniel K. Wójcik (Nencki Institute of Experimental Biology)
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Online registration workflows for atlases of rodent brain and accuracy assessment of spatial translation
Ilya Zaslavsky (San Diego Supercomputer Center, UCSD), Asif Memon (University of California, San Diego), Stephan Lamont (University of California, San Diego), David Valentine (San Diego Supercomputer Center, UCSD), Luis Ibanez (Kitware, Inc.), Gang Song (University of Pennsylvania), Brian Avants (University of Pennsylvania), James Gee (University of Pennsylvania), Yang Liu (University of Pennsylvania), Jyl Boline (Informed Minds)
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Application and evaluation of automated methods to extract brain connectivity statements from free text
Leon French (University of British Columbia), Suzanne Lane (University of British Columbia), Lydia Xu (University of British Columbia), Cathy Kwok (University of British Columbia), Celia Siu (University of British Columbia), YiQi Chen (University of British Columbia), Claudia Krebs (University of British Columbia), Paul Pavlidis (University of British Columbia)
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Registration workflows for the creation of INCF digital atlas hubs
Jyl Boline (Informed Minds), Brian Avants (University of Pennsylvania), Richard Baldock (MRC Human Genetics Unit and IGMM), Rembrandt Bakker (Radboud University), Albert Burger (MRC Human Genetics Unit and Heriot-Watt University), James Gee (University of Pennsylvania), Christian Haselgrove (University of Massachusetts Medical Center), Andreas Hess (Institute of Experimental and Clinical Pharmacology and Toxicology), Luis Ibanez (Kitware Inc.), Stephen Larson (University of California), Piotr Majka (Nencki Institute of Experimental Biology), Yuko Okamura-Oho (Brain Research Network and RIKEN Advanced Science Institute), Seth Ruffins (Broad CIRM Center, USC), Ilya Zaslavsky (San Diego Supercomputer Center, University of California)
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NeuroMaps: Map Data to the Waxholm Atlas for Presentation and Publication
Douglas Bowden (University of Washington - Seattle), Eider Moore (University of Washington - Seattle), Shanshan Sun (University of Washington - Seattle), Mark Dubach (University of Washington - Seattle )
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A segmentation guide and probabilistic atlas of the C57BL/6J mouse brain from magnetic resonance imaging
Jeremy Ullmann (The University of Queensland), Charles Watson (Curtin University), Andrew Janke (The University of Queensland), Marianne Keller (The University of Queensland), Nyoman Kurniawan (The University of Queensland), Zhengyi Yang (The University of Queensland), Kay Richards (Florey Neurosciences Institute), George Paxinos (The University of New South Wales, ), Gary Egan (Monash University), Steven Petrou (Florey Neuroscience Institutes), Perry Bartlett (The University of Queensland), Graham Galloway (The University of Queensland), David Reutens (The University of Queensland)
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Integrated Analysis of Anatomical Gene Expression Maps and Co-Expression Networks Using a Database, ViBrism
Yuko Okamura-Oho (BReNt-Brain Research Network and Advanced Science Institute, RIKEN), Kazuro Shimokawa (Department of Gene Diagnostics and Therapeutics, Research Institute, National Center for Global Health and Medicine), Satoko Takemoto (Bio-research Infrastructure Construction Team, Advanced Science Institute, RIKEN ), Gang Song (Penn Image Computing and Science Laboratory, University of Pennsylvania), James Gee (Penn Image Computing and Science Laboratory, University of Pennsylvania), Hideo Yokota (Bio-research Infrastructure Construction Team, Advanced Science Institute, RIKEN )
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A Digital Atlas of Ion Channels Expression Patterns in the Two-Week-Old Rat Brain
Volodymyr Shcherbatyy (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), James Carson (Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA), Murat Yaylaoglu (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Katharina Jaeckle (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Frauke Grabbe (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Maren Brockmeyer (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen), Ezekiel Gomez (Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA), Tao Ju (Department of Computer Science and Engineering, Washington University in St. Louis, St. Louis, MO), Gregor Eichele (Department of Genes and Behavior, Max Plank Institute for Biophysical Chemistry, Göttingen)
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16 landmarks of the mouse brain have been validated as fiducials for registration to WHS
Marina Sergejeva (Institute of Pharmacology, FAU Erlangen), Rembrandt Bakker (Radboud University Nijmegen), André Gaudnek (Institute of Pharmacology, FAU Erlangen), Yuko Okamura-Oho (Brain Research Network and RIKEN Advanced Science Institute), Jyl Boline (Informed Minds), Andreas Hess (Institute of Pharmacology, FAU Erlangen)
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First generation Waxholm atlas of the Sprague-Dawley rat brain
Eszter A. Papp (CMBN, Institute of Basic Medical Sciences, University of Oslo), Trygve B. Leergaard (CMBN, Institute of Basic Medical Sciences, University of Oslo), G. Allan Johnson (Center for in vivo Microscopy, Dept Radiology, Duke University Medical Center), Jan G. Bjaalie (CMBN, Institute of Basic Medical Sciences, University of Oslo)
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High resolution volumetric atlas of the rat hippocampal region and its subdivisions
Lisa J Kjonigsen (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, UIO, Oslo), Trygve B Leergaard (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, UIO, Oslo), G Allan Johnson (Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC), Menno P Witter (The Kavli Institute for Systems Neuroscience & Centre for the Biology of Memory, NTNU, Trondheim), Jan G Bjaalie (Centre for Molecular Biology and Neuroscience, Institute of Basic Medical Sciences, UIO, Oslo)
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Virtual Fly Brain - a data hub for Drosophila neurobiology
David Osumi-Sutherland (University of Cambridge), Nestor Milyaev (Edinburgh University), Marta Costa (University of Cambridge), Gregory S.X.E. Jefferis (MRC Laboratory of Molecular Biology), Cahir J. O'Kane (University of Cambridge), J. Douglas Armstrong (Edinburgh University)
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101 labeled brains and a new human cortical labeling protocol
Jason Tourville (Boston University), Arno Klein (Columbia University)
Neuroimaging (16)
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Correlation between 50-kHz band activity in primary auditory cortex and social interaction in rats
Hengjun J Kim (Korea Basic Science Institute), Gyunggoo Cho (Korea Basic Science Institute), Youngkyu Song (Korea Basic Science Institute), Song-I Chun (Korea Basic Science Institute), Dongwan Lim (Korea Basic Science Institute), Jeong Kon Kim (Radiology, Asan medical center), Young Ro Kim (Radiology, Massachusetts General Hospital)
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CCS: A Connectome Computation System for Discovery Sciences
Xi-Nian Zuo (Institute of Psychology, Chinese Academy of Sciences), Lili Jiang (Institute of Psychology, Chinese Academy of Sciences), Zhi Yang (Institute of Psychology, Chinese Academy of Sciences), Ting Xu (Institute of Psychology, Chinese Academy of Sciences), Zhe Zhang (Institute of Psychology, Chinese Academy of Sciences), Feng-Mei Fan (Institute of Psychology, Chinese Academy of Sciences), Xiao-Yan Cao (Institute of Psychology, Chinese Academy of Sciences), Hui-Jie Li (Institute of Psychology, Chinese Academy of Sciences), Gao-Xia Wei (Institute of Psychology, Chinese Academy of Sciences)
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Textmining for cognitive paradigm annotation
Chayan Chakrabarti (University of New Mexico, Albuquerque, NM), George Luger (University of New Mexico, Albuquerque, NM), Angela Laird (University of Texas, San Antonio), Jessica Turner (Mind Research Network, Albuquerque, NM)
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New perspectives in visualisation for neuroimaging
David Barnes (Monash Biomedical Imaging & Monash e-Research Centre (Monash University)), Gary Egan (Monash Biomedical Imaging (Monash University)), Parnesh Raniga (Monash Biomedical Imaging (Monash University)), Owen Kaluza (Monash e-Research Centre & Monash Biomedical Imaging (Monash University))
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A Semi-automated Program for Axonal Reconstructions from Time-lapse 2-Photon Images
Zhilun Yang (School of Software, Tsinghua University), Qian Wang (Department of Biomedical Engineering, School of Medicine, Tsinghua University), Ge Gao (Department of Biomedical Engineering, School of Medicine, Tsinghua University), Xuesong Li (Department of Biomedical Engineering, School of Medicine, Tsinghua University), Federico Grillo (MRC Clinical Sciences Centre, Imperial College London, Du Cane road, London), Valentina Ferretti (MRC Clinical Sciences Centre, Imperial College London, Du Cane road, London), Vincenzo De Paola (MRC Clinical Sciences Centre, Imperial College London, Du Cane road, London), Sen Song (Department of Biomedical Engineering, School of Medicine, Tsinghua University)
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A multi-modality neuroimaging research data informatics system
Gary Egan (Monash University), David Barnes (Monash University), Neil Killeen (University of Melbourne), Jason Lohrey (Arcitecta Pty Ltd), Wilson Liu (University of Melbourne), Wojtek Goscinksi (Monash University), Nicholas McPhee (Monash University)
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Neuroimaging in the Browser using the X Toolkit
Daniel Haehn (Children's Hospital Boston, Harvard Medical School), Nicolas Rannou (Children's Hospital Boston, Harvard Medical School), Banu Ahtam (Children's Hospital Boston, Harvard Medical School), Ellen Grant (Children's Hospital Boston, Harvard Medical School), Rudolph Pienaar (Children's Hospital Boston, Harvard Medical School)
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Projectome: Set up and testing of a High Performance Computational Infrastructure for processing and visualizing neuro-anatomical information obtained using confocal ultra-microscopy techniques
Ludovico Silvestri (LENS), Alessandro Bria (UCBM), Leonardo Sacconi (LENS), Anna Letizia Allegra Mascaro (LENS), Maria Chiara Pettenati (ICON), Sanzio Bassini (CINECA), Carlo Cavazzoni (CINECA), Giovanni Erbacci (CINECA), Roberta Turra (CINECA), Giuseppe Fiameni (CINECA), Valeria Ruggiero (UNIFE), Paolo Frasconi (DSI - UNIFI), Simone Marinai (DSI - UNIFI), Marco Gori (DiSI - UNISI), Paolo Nesi (DSI - UNIFI), Renato Corradetti (Neuroscience - UNIFI), Giulio Iannello (UCBM), Francesco Saverio Pavone (ICON, LENS)
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BRAINSTORM Towards Clinically and Scientifically Useful NeuroImaging Analytics
Joshua Vogelstein (Johns Hopkins University), Sharad Sikka (Nathan Klein Institute), Brian Cheung (Nathan Klein Institute), Ranjit Khanuja (Child Mind Institute), Qinyang Li (Child Mind Institute), Yan Chao-Gan (Child Mind Institute), Carey Priebe (Johns Hopkins University), Vince Calhoun (Mind Research Network), R. Jacob Vogelstein (Johns Hopkins University), Michael Milham (Child Mind Institute), Randal Burns (Johns Hopkins University)
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Manual Segmentation of Fiber Tracts with Bundles of Interest
Paolo Avesani (CIMeC Center for Mind/Brain Sciences), Eleftherios Garyfallidis (University of Cambridge), Emanuele Olivetti (CIMeC Center for Mind/Brain Sciences), Stephan Gerhard (ETH Zurich)
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NITRC Phase 2 - Towards a Sustainable Resource
David Kennedy (Univ. of Massachusetts Medical Center), Christian Haselgrove (Univ. of Massachusetts Medical Center)
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Automated analysis of morphological and synaptic characteristics in neurons
Johannes Hjorth (Vrije Universiteit Amsterdam), Sabine Schmitz (Vrije Universiteit Amsterdam)
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3D Statistical Parametric Mapping of quiet sleep EEG in the first year of life
Pedro A. Valdes-Sosa (Cuban Neuroscience Center), Jorge Bosch-Bayard (Cuban Neurosceince Center)
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Automated Functional MRI Quality Assessment
Gabriele Fariello (Harvard University / Massachusetts General Hospital), Victor Petrov (Massachusetts General Hospital), Timothy O'Keefe (Harvard University), Garth Coombs (Massachusetts General Hospital)
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Applying human brain image processing methods to honeybee calcium image data
Arno Klein (Columbia University), Satrajit Ghosh (MIT), Barrett Klein (University of Konstanz), Lisa Rath (University of Konstanz), Giovanni Galizia (University of Konstanz), Christoph Kleineidam (University of Konstanz)
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BIPS: A Framework for Curating and Executing Brain Imaging Pipelines
Satrajit Ghosh (Massachusetts Institute of Technology), Anisha Keshavan (Massachusetts Institute of Technology), John Salvatore (Massachusetts Institute of Technology), Arno Klein (Columbia University)
Genomics and genetics (3)
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Neurocarta: online platform for integration and sharing of phenotypic and genomics information
Elodie Portales-Casamar (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC), Carolyn Ch’ng (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC), Frances Lui (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC), Nicolas St-Georges (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC), Anton Zoubarev (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC), Paul Pavlidis (Centre for High-Throughput Biology, University of British Columbia, Vancouver, BC)
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Molecular systems biology models of the post synaptic density.
J Douglas Armstrong (School of Informatics, University of Edinburgh.)
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A sparse genetic code underlies the neuroanatomical organization of the brainstem
David W. Matthews (University of California, San Diego), Harvey J. Karten (University of California, San Diego), David Kleinfeld (University of California, San Diego)
Large scale modeling (7)
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Universal principles of topology governing both of structural and effective connectivity
Masanori Shimono (University of Tokyo), John Beggs (Indiana University)
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Multiscale Modeling in MOOSE: Interfaces, Interoperability and Standards
Subhasis Ray (NCBS), Niraj Dudani (NCBS), Hanuma Chaitanya Chintaluri (NCBS), G. V. Harsharani (NCBS), Upinder Bhalla (NCBS)
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Combining simulator independent network descriptions with run-time interoperability based on PyNN and MUSIC
Jochen Martin Eppler (Institute of Neuroscience and Medicine (INM-6), Computational and Systems Neuroscience, Research Center Jülich), Mikael Djurfeldt (PDC Center for High Performance Computing, School of Computer Science and Communication, KTH), Eilif Muller (Blue Brain Project, Ecole Polytechnique Fédérale de Lausanne (EPFL)), Markus Diesmann (Institute of Neuroscience and Medicine (INM-6), Computational and Systems Neuroscience, Research Center Jülich), Andrew Davison (Unité de Neurosciences Intégratives et Computationnelles (UNIC), Centre National de la Recherche Scientifique)
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Spiking neuronal network simulation technology for contemporary supercomputers
Moritz Helias (Inst of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience, Research Center Juelich), Susanne Kunkel (Functional Neural Circuits Group Albert-Ludwig University of Freiburg), Jochen Eppler (Inst of Neuroscience and Medicine (INM-6), Computational and Systems Neuroscience, Research Center Juelich), Gen Masumoto (High-Performance Computing Team, RIKEN, Computational Science Research Program Kobe), Jun Igarashi (Laboratory for Neural Circuit Theory, RIKEN Brain Science Institute, Wako), Shin Ishii (Integrated Systems Biology, Laboratory Department of Systems Science, Graduate School of Informatics, Kyoto University), Tomoki Fukai (Laboratory for Neural Circuit Theory, RIKEN Brain Science Institute, Wako), Abigail Morrison (Functional Neural Circuits Group Albert-Ludwig University of Freiburg), Markus Diesmann (Inst of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience, Research Center Juelich)
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A cytoskeleton-based 3D morphological simulation method for detailed local structure of the developing neural cell
Naoto Yukinawa (Graduate School of Informatics, Kyoto University), Honda Naoki (Graduate School of Informatics, Kyoto University), Shin Ishii (Graduate School of Informatics, Kyoto University)
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Neurons to Algorithms neural circuit model development platform
Derek Trumbo (Sandia National Laboratories ), Christina Warrender (Sandia National Laboratories ), James Aimone (Sandia National Laboratories ), Corinne Teeter (Sandia National Laboratories ), Fred Rothganger (Sandia National Laboratories )
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NeuroXyce: a highly parallelized simulator for biologically realistic neural networks
Christina Warrender (Sandia National Laboratories), James Aimone (Sandia National Laboratories), Corinne Teeter (Sandia National Laboratories), Richard Schiek (Sandia National Laboratories)
Neuromorphic engineering (0)
Brain machine interface (5)
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Comodulation Masking Release provoked by direct electrical stimulation of auditory nerve fibers
Stefan Zirn (ENT clinics, Ludwig-Maximilians-University of Munich), John-Martin Hempel (ENT clinics, Ludwig-Maximilians-University of Munich), Maria Schuster (ENT clinics, Ludwig-Maximilians-University of Munich), Werner Hemmert (IMETUM, Technical University of Munich)
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Phase stability in the SSVEP responses
Maciej Labecki (University of Warsaw), Pawel Kordowski (University of Warsaw), Mateusz Kruszynski (University of Warsaw), Jakub Maciejewski (University of Warsaw), Rafal Kus (University of Warsaw), Piotr Suffczynski (University of Warsaw)
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Temporal characteristic of SSVEP response
Anna Duszyk ( University of Social Sciences and Humanities ), Rafał Kuś (University of Warsaw, Faculty of Physics), Piotr Durka (University of Warsaw, Faculty of Physics)
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Low-cost eyetrackers as assistive devices
Dawid Laszuk (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Tomasz Spustek (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Jarosław Rybusiński (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Piotr Durka (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland)
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BCI Appliance
Tomasz Spustek (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Mateusz Kruszyński (University of Warsaw, Faculty of Psychology, ul. Stawki 5/7, 00-183 Warszawa, Poland), Dawid Laszuk (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Piotr Milanowski (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Maciej Łabęcki (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Karol Augustin (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Anna Duszyk (University of Social Sciences and Humanities, ul. Chodakowska 19/31, 03-815 Warszawa, Poland), Rafał Kuś (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Jarosław Żygierewicz (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland), Piotr Durka (University of Warsaw, Faculty of Physics, ul. Hoża 69, 00-681 Warszawa, Poland)
Electrophysiology (17)
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Workflow automation of electrophysiological data analysis in receptive field mapping
Bengt Ljungquist (Neuronano Research Center, Lund University)
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Multiplexed, data structure-based enriched physiological event marker system
Derek Rollend (JHU/APL), Marcos Osorno (JHU/APL)
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Tools for analysis of high-density multielectrode recordings in the neonatal mouse retina
Matthias H. Hennig (School of Informatics, University of Edinburgh), Oliver Muthmann (NCBS Banglaore, India and School of Informatics, University of Edinburgh), Alessandro Maccione (Department of Neuroscience and Brain Technologies , Italian Institute of Technology (IIT)), Mauro Gandolfo (3Brain GmbH, Landquart), Stephen Eglen (Department of Applied Mathematics and Theoretical Physics, University of Cambridge), Luca Berdondini (Department of Neuroscience and Brain Technologies , Italian Institute of Technology (IIT)), Evelyne Sernagor (Medical School, Newcastle University)
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Implementing Workflow Strategies to Handle the Analysis of Complex Electrophysiological Data Sets
Michael Denker (Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich), Andrew Davison (Unité de Neurosciences, Information et Complexité (UNIC), CNRS UPR-3293), Markus Diesmann (Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich), Sonja Grün (Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich)
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FPGA implementation of a template matching-based real-time spike sorter for extracellular multi-electrode recordings of neural signals
Jelena Dragas (ETH Zurich), David Jaeckel (ETH Zurich), Felix Franke (ETH Zurich), Andreas Hierlemann (ETH Zurich)
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NeuroElectro: A database describing the electrophysiology properties of different neuron types
Shreejoy Tripathy (Carnegie Mellon University), Judith Savitskaya (Carnegie Mellon University), Richard Gerkin (Carnegie Mellon University), Nathaniel Urban (Carnegie Mellon University)
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The adaptation of spike propagation delays in single and networks of neurones.
Yossi Buskila (MARCS Institute, University of Western Sydney)
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Mission and activities of the INCF Electrophysiology Data Sharing Task Force
Friedrich Sommer (UC Berkeley), Thomas Wachtler (LMU Munich), Andrew Davison (CNRS, Gif-sur-Yvette), Michael Denker (INM-6, Research Center Jülich), Jeffrey Grethe (UCSD), Sonja Grün (INM-6. Jülich), Kenneth Harris (Imperial College London), Colin Ingram (University of Newcastle), Marja-Leena Linne (Tampere Institute of Technology), Bengt Ljungquist (Lund University), John Miller (Montana State University), Roman Mouček (Univ. of West Bohemia, Pilsen), Hyrum Sessions (Blackrock Microsystems), Gordon Shepherd (Yale), Leslie Smith (University of Stirling, Scotland), Jeff Teeters (UC Berkeley), Shiro Usui (RIKEN Brain Science Institute)
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Detection of Neuronal Assemblies by Frequent Item Set Mining
Sonja Gruen (Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich; Theoretical Systems Neurobiology, RWTH Aachen), David Picado-Muino (European Centre for Soft Computing, c/ Gonzalo Gutiérrez Quirós s/n, 33600 Mieres, Asturias), Denise Berger (Lab. Neuromotor Physiology, IRCCS Fondazione Santa Lucia, Via Ardeatina 306, 00179 Roma), George Gerstein (Dept. of Neuroscience, University of Pennsylvania, Philadelphia PA 19104), Christian Borgelt (European Centre for Soft Computing, c/ Gonzalo Gutiérrez Quirós s/n, 33600 Mieres, Asturias)
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A novel closest white-matter-contact-based referencing scheme for stereotactical EEG recordings
Gabriele Arnulfo (Department of Communication, Computer and System Sciences, Biolab University of Genoa), Andrea Schenone (Department of Communication, Computer and System Sciences, Biolab University of Genoa), Marcello Massimini (Department of Clinical Sciences L. Sacco Università degli Studi di Milano, Milan, Italy.), Andrea Pigorini (Department of Clinical Sciences L. Sacco Università degli Studi di Milano, Milan, Italy.), Lino Nobili (Niguarda Hospital Milan ), Marco M. Fato (Department of Communication, Computer and System Sciences, Biolab University of Genoa), Matias J. Palva (Neuroscience Center, University of Helsinki)
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Electrophysiology lab automation: a case study
Rembrandt Bakker (Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen), Dirk Schubert (Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen Medical Centre), Paul Tiesinga (Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen)
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Accessing electrophysiological data from Python
Christian Kellner (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany), Thomas Wachtler (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany)
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Integrating automated metadata handling into the laboratory workflow.
Jan Grewe (Ludwig-Maximilians-Universität München), Adrian Stoewer (Ludwig-Maximilians-Universität München), Andrey Sobolev (Ludwig-Maximilians-Universität München), Hagen Fritsch (Ludwig-Maximilians-Universität München), Thomas Wachtler (Ludwig-Maximilians-Universität München), Jan Benda (Ludwig-Maximilians-Universität München)
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ERP experiment in children with developmental coordination disorder as use case for extending EEG/ERP domain ontology
Roman Mouček (Department of Computer Science and Eng..), Pavel Mautner (Department of Computer Science and Engineering), Ladislav Čepička (Department of Physical Education and Sport Science), Irena Holečková (University Hospital in Pilsen)
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Cloud Services and a Data API for Electrophysiology
Andrey Sobolev (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany), Aljoscha Leonhardt (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany), Philipp Rautenberg (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany), Christian Kellner (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany), Andreas Herz (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany), Thomas Wachtler (German INCF Node, Department Biology II, Ludwig-Maximilians-Universität München, Germany)
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Information Transfer and Recovery in the Somatosensory Cortex
Chao Huang (Laboratory of Neural Circuits and Plasticity, University of Southern California), Andrey Resnik (Laboratory of Neural Circuits and Plasticity, University of Southern California), Tansu Celikel (Laboratory of Neural Circuits and Plasticity, University of Southern California)
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Specification of experiment stimuli for sharing electrophysiology data
Jeffrey L. Teeters (UC Berkeley), Wayne Christopher (UC Berkeley), Marvin Thielk (UC Berkeley), Friedrich T. Sommer (UC Berkeley)
Infrastructural and portal services (12)
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The XNAT imaging informatics platform: Recent advances
Daniel Marcus (Washington University), Rick Herrick (Washington University), Timothy Olsen (Washington University), Aditya Siram (Washington University), Michael McKay (Washington University), Jordan Woerndle (Washington University)
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Using the NIFSTD Ontology to Improve PubMed Search Results
Hitesh Sabnani (University of California San Diego), Anita Bandrowski (University of California San Diego), Amarnath Gupta (University of California San Diego)
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BrainLiner: A Platform for Sharing and Searching Time-aligned Neural and Behavioral Data
Makoto Takemiya (Department of Neuroinformatics, ATR), Yukiyasu Kamitani (Department of Neuroinformatics, ATR)
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Improvement of Simulation Platform for providing reliable and easy use model simulation environment
Hidetoshi Ikeno (University of Hyogo), Tadashi Yamazaki (University of Electro-Communications), Yoshihiro Okumura (RIKEN Brain Science Institute), Shunji Satoh (University of Electro-Communications), Yoshimi Kamiyama (Aichi Prefectural University), Yutaka Hirata (Chubu University), Keiichiro Inagaki (RIKEN Brain Science Institute), Akito Ishihara (Chukyo University), Takayuki Kannon (RIKEN Brain Science Institute), Hiroaki Wagatsuma (Kyushu Institute of Technology), Shiro Usui (RIKEN Brain Science Institute)
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Interactive brain map in the Invertebrate Brain Platform (IVB-PF)
Akira Takashima (Research Center for Advanced Science and Technology, The University of Tokyo), Tomoki Kazawa (Research Center for Advanced Science and Technology, The University of Tokyo), Shigehiro Namiki (Research Center for Advanced Science and Technology, The University of Tokyo), Daisuke Miyamoto (Research Center for Advanced Science and Technology, The University of Tokyo), Stephan Haupt (Research Center for Advanced Science and Technology, The University of Tokyo), Hidetoshi Ikeno (School of Human Science and Environment, University of Hyogo), Ryohei Kanzaki (Research Center for Advanced Science and Technology, The University of Tokyo), Shiro Usui (RIKEN Brain Science Institute)
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Automatic spike sorting evaluation: A website based community approach
Felix Franke (ETH Zürich, Bio Engineering Laboratory (BEL)), Philipp Meier (School for Electrical Engineering and Computer Science, Berlin Institute of Technology, Germany), Andrey Sobolev (Biologie II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany), Espen Hagen (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway), Andreas Hierlemann (ETH Zürich, Bio Engineering Laboratory (BEL)), Klaus Obermayer (Bernstein Center for Computational Neuroscience, Berlin, Germany), Gaute T Einevoll (Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway), Thomas Wachtler (Biologie II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany)
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Semantic Framework in EEG/ERP Portal
Petr Ježek (University of West Bohemia), Roman Mouček (University of West Bohemia)
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Development of a workflow system for the CARMEN Neuroscience Portal
Colin Ingram (Newcastle university), Mark Jessop (University of York), Michael Weeks (University of York ), Jim Austin (University of York), Martyn Fletcher (University of York )
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A Simple Tool for Neuroimaging Data Sharing
Christian Haselgrove (University of Massachusetts Medical School)
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A Structure-Centered Portal for Child Psychiatry
Pallavi Rane (University of Massachusetts Medical School), Christian Haselgrove (University of Massachusetts Medical School), David Kennedy (University of Massachusetts Medical School)
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Neuroimaging Data Access and Query through a Common Application Programming Interface
B. Nolan Nichols (Integrated Brain Imaging Center, University of Washington, Seattle, WA), Christian Haselgrove (University of Massachusetts Medical School, Worcester, MA), Jean-Baptiste Poline (Neurospin-I2BM-CEA, Gif sur Yvette), Satrajit S. Ghosh (McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA)
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The Neuroscience Information Framework (NIF): A Unified Semantic Framework and Associated Tools for Discovery, Integration, and Utilization of Biomedical Data and Resources on the Web
Jeffrey Grethe (University of California, San Diego), Anita Bandrowski (University of California, San Diego), Jonathan Cachat (University of California, San Diego), Amarnath Gupta (University of California, San Diego), Fahim Imam (University of California, San Diego), Stephen Larson (University of California, San Diego), Luis Marenco (Yale University), Perry Miller (Yale University), Gordon Shepherd (Yale University), Maryann Martone (University of California, San Diego), NIF Consortium (University of California, San Diego)
Clinical neuroscience (2)
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Neuroinformatics students helping paralysed and disabled people with self-made interfaces – with case studies.
Tadeusz Czerniawski (Faculty of Physics, University of Warsaw), Michal Czerwinski (Faculty of Physics, University of Warsaw), Jerzy Grynczewski (Faculty of Physics, University of Warsaw), Wioleta Kijewska (Faculty of Physics, University of Warsaw), Natan Napiorkowski (Faculty of Physics, University of Warsaw), Anja Ries (Faculty of Physics, University of Warsaw), Karol Siek (Faculty of Physics, University of Warsaw), Katarzyna Tolubinska (Faculty of Physics, University of Warsaw)
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Intuitive and efficient deployment of neuroimaging pipelines in clinical research with BRICpipe
Andreas Glatz (BRIC, Division of Clinical Neurosciences, University of Edinburgh), Colin R. Buchanan (School of Informatics, University of Edinburgh), Maria C. Valdés Hernández (BRIC, Division of Clinical Neurosciences, University of Edinburgh), Mark E. Bastin (BRIC, Division of Clinical Neurosciences, University of Edinburgh), Joanna M. Wardlaw (BRIC, Division of Clinical Neurosciences, University of Edinburgh)
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